Publications

Tschernoster, N.; Erger, F.; Kohl, S.; Reusch, B.; Wenzel, A.; Walsh, S.; Thiele, H.; Becker, C.; Franitza, M.; Bartram, M. P. et al.; Kömhoff, M.; Schumacher, A. L.; Kukat, C.; Borodina, T.; Quedenau, C.; Nürnberg, P.; Rinschen, M. M.; Driller, J. H.; Pedersen, B. P.; Schlingmann, K. P.; Hüttel, B.; Bockenhauer, D.; Beck, B.; Altmüller, J.: Long-read sequencing identifies a common transposition haplotype predisposing for CLCNKB deletions. Genome Medicine 15, 62 (2023)

Gaudreault, N.; Ali, R.; Avilov, S. V.; Bagley, S.; Bammann, R. R.; Barachati, F.; Barna, L.; Berno, V.; Bertocchi, C.; Boczonadi, V. et al.; Boehm, U.; Bosch, M.; Brideau, C.; Carvalho, N.; Chatterjee, N.; Colarusso, P.; Cole, R.; Darwish-Miranda, N.; Dervish, S.; Dietzel, R.; Duwé, S.; Eismann, F.; Faklaris, O.; Felscher, A.; Ferdous, Z.; Guilbert, T.; Gonnert, M.; Grunwald, D.; Hoffmann, B.; Kirchner, M.; Krens, G.; Laude, A. J.; LeDue, J. M.; Liu, P.; Lorentz, P.; Martins, G. G.; Mezzana Robinson, V.; Mitovski, M.; Nelson, M. S.; Nitschke, R.; Payne-Dwyer, A. L.; Pimente Cabrera, J. A.; Podder, S.; Schroth-Diez, B.; Schwartz, S.; Srinivasan, S.; Theunauer, R.; van der Oord, K.; Taatjes, D. J.; van Oostende-Triplet, C.; Wee, T.-L.; Weiss, K. R.; Gelman, L.: lllumination Power, Stability, and Linearity Measurements for Confocal and Widefield Microscopes V.2. protocols.io (2023)

Rivera Mejias, P.; Narbona-Pérez, Á. J.; Hasberg, L.; Kroczek, L.; Bahat, A.; Lawo, S.; Folz-Donahue, K.; Schumacher, A. L.; Ahola, S.; Mayer, F. C. et al.; Giavalisco, P.; Nolte, H.; Lavandero, S.; Langer, T.: The mitochondrial protease OMA1 acts as a metabolic safeguard upon nuclear DNA damage. Cell Reports 42, 112332, p. 112332 (2023)

Pouikli, A.; Maleszewska, M.; Parekh, S.; Yang, M.; Nikopoulou, C.; Bonfiglio, J. J.; Mylonas, C.; Sandoval, T.; Schumacher, A. L.; Hinze, Y. et al.; Matić, I.; Frezza, C.; Tessarz, P.: Hypoxia promotes osteogenesis by facilitating acetyl-CoA-mediated mitochondrial-nuclear communication. EMBO J, p. e111239 (2022)

Vesting, A. J.; Jais, A.; Klemm, P.; Steuernagel, L.; Wienand, P.; Fog-Tonnesen, M.; Hvid, H.; Schumacher, A. L.; Kukat, C.; Nolte, H. et al.; Georgomanolis, T.; Altmuller, J.; Pasparakis, M.; Schmidt, A.; Kruger, M.; Supprian, M. S.; Waisman, A.; Straub, B. K.; Raschzok, N.; Bernier, M.; Birkenfeld, A. L.; Hovelmeyer, N.; Bruning, J. C.; Wunderlich, F. T.: NIK/MAP3K14 in hepatocytes orchestrates NASH to hepatocellular carcinoma progression via JAK2/STAT5 inhibition. Mol Metab, p. 101626 (2022)

Nelson, G.; Alexopoulus, I.; Azevedo, M.; Barachati, F.; Belavaev, Y.; Carvalho, M. T.; Cesbron, Y.; Dauphin, A.; Corbett, A. D.; Dobbie, I.M. et al.; Gelman, L.; Halidi, N.; Hao, X.; Hartmann, H.; Heintzmann, R.; Hemmerich, R.; Kirchner, M.; Lacoste, J.; Liu, P.; Plantard, L.; Mitchell, C. A.; Müller, T.; van der Oord, K.; Payne-Dwyer, A.; Podder, S.; Rezgui, R.; Ritz, R.; Schwartz, S.; Shaw, M.J.; Wee, T.-L.; Nitschke, R.; Faklaris, O.: Monitoring the point spread function for quality control of confocal microscopes. protocols.io (2022)

Tschernoster, N.; Erger, F.; Walsh, P. R.; McNicholas, B.; Fistrek, M.; Habbig, S.; Schumacher, A. L.; Folz-Donahue, K.; Kukat, C.; Toliat, M. R. et al.; Becker, C.; Thiele, H.; Kavanagh, D.; Nuernberg, P.; Beck, B.; Altmuller, J.: None fits all: Unraveling structural rearrangements of the CFH gene cluster in aHUS patients using molecular combing and long fragment targeted sequencing. J Mol Diagn (2022)

Sun, H.; Jiao, W. B.; Krause, K.; Campoy, J. A.; Goel, M.; Folz-Donahue, K.; Kukat, C.; Huettel, B.; Schneeberger, K.: Chromosome-scale and haplotype-resolved genome assembly of a tetraploid potato cultivar. Nat Genet 54 (3), pp. 342 - 348 (2022)

Gehling, K.; Parekh, S.; Schneider, F.; Kirchner, M.; Kondylis, V.; Nikopoulou, C.; Tessarz, P.: RNA-sequencing of single cholangiocyte-derived organoids reveals high organoid-to organoid variability. Life Sci Alliance 5 (12), p. e202101340 (2022)

Sun, H.; Jiao, W.-B.; Krause, K.; Campoy, J. A.; Goel, M.; Folz-Donahue, K.; Kukat, C.; Huettel, B.; Schneeberger, K.: Chromosome-scale and haplotype-resolved genome assembly of a tetraploid potato cultivar. Nature Genetics, p. 2021.05.15.444292 (2022)

Tschernoster, N.; Erger, F.; Walsh, P. R.; McNicholas, B.; Fistrek, M.; Habbig, S.; Schumacher, A. L.; Folz-Donahue, K.; Kukat, C.; Toliat, M. R. et al.; Becker, C.; Thiele, H.; Kavanagh, D.; Nürnberg, P.; Beck, B. B.; Altmüller, J.: Unraveling Structural Rearrangements of the CFH Gene Cluster in Atypical Hemolytic Uremic Syndrome Patients Using Molecular Combing and Long-Fragment Targeted Sequencing. The Journal of Molecular Diagnostics 24, pp. 619 - 631 (2022)

Vesting, A. J.; Jais, A.; Klemm, P.; Steuernagel, L.; Wienand, P.; Fog-Tonnesen, M.; Hvid, H.; Schumacher, A. L.; Kukat, C.; Nolte, H. et al.; Georgomanolis, T.; Altmüller, J.; Pasparakis, M.; Schmidt, A.; Krüger, M.; Supprian, M. S.; Waisman, A.; Straub, B. K.; Raschzok, N.; Bernier, M.; Birkenfeld, A. L.; Hövelmeyer, N.; Brüning, J. C.; Wunderlich, F. T.: NIK/MAP3K14 in hepatocytes orchestrates NASH to hepatocellular carcinoma progression via JAK2/STAT5 inhibition. Molecular Metabolism 66, 101626, p. 101626 (2022)

Nelson, G.; Boehm, U.; Bagley, S.; Bajcsy, P.; Bischof, J.; Brown, C. M.; Dauphin, A.; Dobbie, I. M.; Eriksson, J. E.; Faklaris, O. et al.; Fernandez-Rodriguez, J.; Ferrand, A.; Gelman, L.; Gheisari, A.; Hartmann, H.; Kukat, C.; Laude, A.; Mitkovski, M.; Munck, S.; North, A. J.; Rasse, T. M.; Resch-Genger, U.; Schuetz, L. C.; Seitz, A.; Strambio-De-Castillia, C.; Swedlow, J. R.; Alexopoulos, I.; Aumayr, K.; Avilov, S.; Bakker, G. J.; Bammann, R. R.; Bassi, A.; Beckert, H.; Beer, S.; Belyaev, Y.; Bierwagen, J.; Birngruber, K. A.; Bosch, M.; Breitlow, J.; Cameron, L. A.; Chalfoun, J.; Chambers, J. J.; Chen, C. L.; Conde-Sousa, E.; Corbett, A. D.; Cordelieres, F. P.; Nery, E. D.; Dietzel, R.; Eismann, F.; Fazeli, E.; Felscher, A.; Fried, H.; Gaudreault, N.; Goh, W. I.; Guilbert, T.; Hadleigh, R.; Hemmerich, P.; Holst, G. A.; Itano, M. S.; Jaffe, C. B.; Jambor, H. K.; Jarvis, S. C.; Keppler, A.; Kirchenbuechler, D.; Kirchner, M.; Kobayashi, N.; Krens, G.; Kunis, S.; Lacoste, J.; Marcello, M.; Martins, G. G.; Metcalf, D. J.; Mitchell, C. A.; Moore, J.; Mueller, T.; Nelson, M. S.; Ogg, S.; Onami, S.; Palmer, A. L.; Paul-Gilloteaux, P.; Pimentel, J. A.; Plantard, L.; Podder, S.; Rexhepaj, E.; Royon, A.; Saari, M. A.; Schapman, D.; Schoonderwoert, V.; Schroth-Diez, B.; Schwartz, S.; Shaw, M.; Spitaler, M.; Stoeckl, M. T.; Sudar, D.; Teillon, J.; Terjung, S.; Thuenauer, R.; Wilms, C. D.; Wright, G. D.; Nitschke, R.: QUAREP-LiMi: A community-driven initiative to establish guidelines for quality assessment and reproducibility for instruments and images in light microscopy. J Microsc 1 (284), pp. 56 - 73 (2021)

Sieben, A.; Hausen, A. C.; Klemm, P.; Jais, A.; Heilinger, C.; Alber, J.; Folz-Donahue, K.; Schumacher, L.; Altmüller, J.; Franitza, M. et al.; Giavalisco, P.; Hinze, Y.; Brodesser, S.; Kukat, C.; Theurich, S.; Brüning, J. C.: P2Y6 receptor signaling in natural killer cells impairs insulin sensitivity in obesity. bioRxiv, p. 2021.06.23.449596 (2021)

Boehm, U.; Nelson, G.; Brown, C. M.; Bagley, S.; Bajcsy, P.; Bischof, J.; Dauphin, A.; Dobbie, I. M.; Eriksson, J. E.; Faklaris, O. et al.; Fernandez-Rodriguez, J.; Ferrand, A.; Gelman, L.; Gheisari, A.; Hartmann, H.; Kukat, C.; Laude, A.; Mitkovski, M.; Munck, S.; North, A. J.; Rasse, T. M.; Resch-Genger, U.; Schuetz, L. C.; Seitz, A.; Strambio-De-Castillia, C.; Swedlow, J. R.; Nitschke, R.: QUAREP-LiMi: a community endeavor to advance quality assessment and reproducibility in light microscopy. Nat Methods 18 (12), pp. 1423 - 1426 (2021)

Damen, M.; Wirtz, L.; Soroka, E.; Khatif, H.; Kukat, C.; Simons, B. D.; Bazzi, H.: High proliferation and delamination during skin epidermal stratification. Nature Communications 12 (1), p. 3227 (2021)

Pouikli, A.; Parekh, S.; Maleszewska, M.; Nikopoulou, C.; Baghdadi, M.; Tripodi, I.; Folz-Donahue, K.; Hinze, Y.; Mesaros, A.; Hoey, D. et al.; Giavalisco, P.; Dowell, R.; Partridge, L.; Tessarz, P.: Chromatin remodeling due to degradation of citrate carrier impairs osteogenesis of aged mesenchymal stem cells. Nature Aging 1 (9), pp. 810 - 825 (2021)

Campoy, J. A.; Sun, H.; Goel, M.; Jiao, W. B.; Folz-Donahue, K.; Wang, N.; Rubio, M.; Liu, C.; Kukat, C.; Ruiz, D. et al.; Huettel, B.; Schneeberger, K.: Gamete binning: chromosome-level and haplotype-resolved genome assembly enabled by high-throughput single-cell sequencing of gamete genomes. Genome Biol 21 (1), p. 306 (2020)

Motori, E.; Atanassov, I.; Kochan, S. M. V.; Folz-Donahue, K.; Sakthivelu, V.; Giavalisco, P.; Toni, N.; Puyal, J.; Larsson, N.G.: Neuronal metabolic rewiring promotes resilience to neurodegeneration caused by mitochondrial dysfunction. Sci Adv 6 (35), p. eaba8271 (2020)

Dietzel, S.; Ferrando-May, E.; Fried, H.; Kukat, C.; Naumann, A.; Nitschke, R.; Pasierbek, P.; Peychl, J.; Rasse, T. M.; Schroth-Diez, B. et al.; Stockl, M. T.; Terjung, S.; Thuenauer, R.; Tulok, S.; Weidtkamp-Peters, S.; German BioImaging-Society for, M.; Image, A.: A Joint Action in Times of Pandemic: The German BioImaging Recommendations for Operating Imaging Core Facilities During the SARS-Cov-2 Emergency. Cytometry A 9 (97), pp. 882 - 886 (2020)