Proteomics Core Facility

Journal Article (53)

2020
Journal Article
Alsina, D.; Lytovchenko, O.; Schab, A.; Atanassov, I.; Schober, F. A.; Jiang, M.; Koolmeister, C.; Wedell, A.; Taylor, R. W.; Wredenberg, A. et al.; Larsson, N.G.: FBXL4 deficiency increases mitochondrial removal by autophagy. EMBO Mol Med 12 (7), p. e11659 (2020)
Journal Article
Nava, M. M.; Miroshnikova, Y. A.; Biggs, L. C.; Whitefield, D. B.; Metge, F.; Boucas, J.; Vihinen, H.; Jokitalo, E.; Li, X.; Garcia Arcos, J. M. et al.; Hoffmann, B.; Merkel, R.; Niessen, C. M.; Dahl, K. N.; Wickström, S. A.: Heterochromatin-Driven Nuclear Softening Protects the Genome against Mechanical Stress-Induced Damage. Cell 181 (4), pp. 800 - 817 e22 (2020)
2019
Journal Article
Tain, L.; Jain, C.; Nespital, T.; Fröhlich, J.; Hinze, Y.; Grönke, S.; Partridge, L.: Longevity in response to lowered insulin signaling requires glycine N‐methyltransferase‐dependent spermidine production. Aging Cell 19 (1) (2019)
Journal Article
Busch, J.; Cipullo, M.; Atanassov, I.; Bratic, A.; Ramos, E.S.; Schöndorf, T.; Li, X.; Pearce, S. F.; Milenkovic, D.; Rorbach, J. et al.; Larsson, N.G.: MitoRibo-Tag Mice Provide a Tool for In Vivo Studies of Mitoribosome Composition. Cell Rep 29 (6), pp. 1728 - 1738 e9 (2019)
Journal Article
Castillo-Quan, J. I.; Tain, L.; Kinghorn, K. J.; Li, L.; Grönke, S.; Hinze, Y.; Blackwell , T. K.; Bjedov, I.; Partridge, L.: A triple drug combination targeting components of the nutrient-sensing network maximizes longevity. Proceedings of the National Academy of Sciences of the United States of America 116 (42), pp. 20817 - 20819 (2019)
Journal Article
Gopalakrishna, S.; Pearce, S. F.; Dinan, A. M.; Schober, F. A.; Cipullo, M.; Spahr, H.; Khawaja, A.; Maffezzini, C.; Freyer, C.; Wredenberg, A. et al.; Atanassov, I.; Firth, A. E.; Rorbach, J.: C6orf203 is an RNA-binding protein involved in mitochondrial protein synthesis. Nucleic Acids Res 47 (17), pp. 9386 - 9399 (2019)
Journal Article
Wang, Y.; Garrido-Oter, R.; Wu, J.; Winkelmüller, T. M.; Agler, M.; Colby, T.; Nobori, T.; Kemen, E.; Tsuda, K.: Site-specific cleavage of bacterial MucD by secreted proteases mediates antibacterial resistance in Arabidopsis. Nat Commun 10 (1), p. 2853 (2019)
Journal Article
Jiang, M.; Koolmeister, C.; Misic, J.; Siira, S.; Kuhl, I.; Silva Ramos, E.; Miranda, M.; Jiang, M.; Posse, V.; Lytovchenko, O. et al.; Atanassov, I.; Schober, F. A.; Wibom, R.; Hultenby, K.; Milenkovic, D.; Gustafsson, C. M.; Filipovska, A.; Larsson, N.G.: TEFM regulates both transcription elongation and RNA processing in mitochondria. EMBO Rep 20 (6) (2019)
Journal Article
Ignarski, M.; Rill, C.; Kaiser, R. W. J.; Kaldirim, M.; Neuhaus, R.; Esmaillie, R.; Li, X.; Klein, C.; Bohl, K.; Petersen, M. et al.; Frese, C. K.; Hohne, M.; Atanassov, I.; Rinschen, M. M.; Hopker, K.; Schermer, B.; Benzing, T.; Dieterich, C.; Fabretti, F.; Muller, R. U.: The RNA-Protein Interactome of Differentiated Kidney Tubular Epithelial Cells. J Am Soc Nephrol 30 (4), pp. 564 - 576 (2019)
Journal Article
Schilling, J.; Broemer, M.; Atanassov, I.; Duernberger, Y.; Vorberg, I.; Dieterich, C.; Dagane, A.; Dittmar, G.; Wanker, E.; van Roon-Mom, W. et al.; Winter, J.; Krauss, S.: Deregulated Splicing Is a Major Mechanism of RNA-Induced Toxicity in Huntington's Disease. J Mol Biol 431 (9), pp. 1869 - 1877 (2019)
2018
Journal Article
Ziemann, S.; van der Linde, K.; Lahrmann, U.; Acar, B.; Kaschani, F.; Colby, T.; Kaiser, M.; Ding, Y.; Schmelz, E.; Huffaker, A. et al.; Holton, N.; Zipfel, C.; Doehlemann, G.: An apoplastic peptide activates salicylic acid signalling in maize. Nat Plants 4 (3), pp. 172 - 180 (2018)
Journal Article
Matic, S.; Jiang, M.; Nicholls, T. J.; Uhler, J. P.; Dirksen-Schwanenland, C.; Polosa, P. L.; Simard, M.-L.; Li, X.; Atanassov, I.; Rackham, O. et al.; Filipovska, A.; Stewart, J.; Falkenberg, M.; Larsson, N.G.; Milenkovic, D.: Mice lacking the mitochondrial exonuclease MGME1 accumulate mtDNA deletions without developing progeria. Nat Commun 9 (1), p. 1202 (2018)
2017
Journal Article
Kühl, I.; Miranda, M.; Atanassov, I.; Kuznetsova, I.; Hinze, Y.; Mourier, A.; Filipovska, A.; Larsson, N.G.: Transcriptomic and proteomic landscape of mitochondrial dysfunction reveals secondary coenzyme Q deficiency in mammals. Elife 6 (2017)
Journal Article
Bonfiglio, J. J.; Colby, T.; Matić, I.: Mass spectrometry for serine ADP-ribosylation? Think o-glycosylation! Nucleic Acids Res 45 (11), pp. 6259 - 6264 (2017)
Journal Article
Bonfiglio, J. J.; Fontana, P.; Zhang, Q.; Colby, T.; Gibbs-Seymour, I.; Atanassov, I.; Bartlett, E.; Zaja, R.; Ahel, I.; Matić, I.: Serine ADP-Ribosylation Depends on HPF1. Molecular Cell 65 (5), pp. 932 - 940.e6 (2017)
Journal Article
Piper, M. D.; Soultoukis, G. A.; Blanc, E.; Mesaros, A.; Herbert, S. L.; Juricic, P.; He, X.; Atanassov, I.; Salmonowicz, H.; Yang, M. et al.; Simpson, S. J.; Ribeiro, C.; Partridge, L.: Matching Dietary Amino Acid Balance to the In Silico-Translated Exome Optimizes Growth and Reproduction without Cost to Lifespan. Cell Metab 25 (3), pp. 610 - 621 (2017)
2016
Journal Article
Rackham, O.; Busch, J. D.; Matic, S.; Siira, S. J.; Kuznetsova, I.; Atanassov, I.; Ermer, J. A.; Shearwood, A. M.; Richman, T. R.; Stewart, J. B. et al.; Mourier, A.; Milenkovic, D.; Larsson, N.G.; Filipovska, A.: Hierarchical RNA Processing Is Required for Mitochondrial Ribosome Assembly. Cell Rep 16 (7), pp. 1874 - 90 (2016)
Journal Article
Leidecker, O.; Bonfiglio, J. J.; Colby, T.; Zhang, Q.; Atanassov, I.; Zaja, R.; Palazzo, L.; Stockum, A.; Ahel, I.; Matić, I.: Serine is a new target residue for endogenous ADP-ribosylation on histones. Nat Chem Biol 12 (12), pp. 998 - 1000 (2016)
Journal Article
Rackham, O.; Busch, J. D.; Matic, S.; Siira, S. .; Kuznetsova, I.; Atanassov, I.; Ermer, J. .; Shearwood, A.-M. J.; Richman, T. .; Stewart, J. B. et al.; Mourier, A.; Milenkovic, D.; Larsson, N.G.; Filipovska, A.: Hierarchical RNA Processing Is Required for Mitochondrial Ribosome Assembly. Cell Reports 16 (7), pp. 1874 - 1890 (2016)
Journal Article
Spåhr, H.; Rozanska, A.; Li, X.; Atanassov, I.; Lightowlers, R. N.; Chrzanowska-Lightowlers, Z. M. A.; Rackham, O.; Larsson, N.G.: SLIRP stabilizes LRPPRC via an RRM-PPR protein interface. Nucleic acids research 44 (14), pp. 6868 - 6882 (2016)
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