Publications of S. Parekh

Nikopoulou, C.; Kleinenkuhnen, N.; Parekh, S.; Sandoval, T.; Ziegenhain, C.; Schneider, F.; Giavalisco, P.; Folz-Donahue, K.; Vesting, A. J.; Kirchner, M. et al.; Bozukova, M.; Vossen, C.; Altmüller, J.; Wunderlich, F. T.; Sandberg, R.; Kondylis, V.; Tresch, A.; Tessarz, P.: Spatial and single-cell profiling of the metabolome, transcriptome and epigenome of the aging mouse liver. Nature Aging (2023)

Pouikli, A.; Maleszewska, M.; Parekh, S.; Yang, M.; Nikopoulou, C.; Bonfiglio, J. J.; Mylonas, C.; Sandoval, T.; Schumacher, A. L.; Hinze, Y. et al.; Matić, I.; Frezza, C.; Tessarz, P.: Hypoxia promotes osteogenesis by facilitating acetyl-CoA-mediated mitochondrial-nuclear communication. EMBO J, p. e111239 (2022)

Pouikli, A.; Maleszewska, M.; Parekh, S.; Nikopoulou, C.; Bonfiglio, J. J.; Mylonas, C.; Sandoval, T.; Hinze, Y.; Matić, I.; Tessarz, P.: Hypoxia promotes osteogenesis via regulation of the mito-nuclear communication. bioRxiv 2022.2002.2026.482117 (2022)

Gehling, K.; Parekh, S.; Schneider, F.; Kirchner, M.; Kondylis, V.; Nikopoulou, C.; Tessarz, P.: RNA-sequencing of single cholangiocyte-derived organoids reveals high organoid-to organoid variability. Life Sci Alliance 5 (12), p. e202101340 (2022)

Demetriadou, C.; Raoukka, A.; Charidemou, E.; Mylonas, C.; Michael, C.; Parekh, S.; Koufaris, C.; Skourides, P.; Papageorgis, P.; Tessarz, P. et al.; Kirmizis, A.: Histone N-terminal acetyltransferase NAA40 links one-carbon metabolism to chemoresistance. Oncogene 41 (4), pp. 571 - 585 (2021)

Kochan, D. Z.; Mawer, J. S. P.; Massen, J.; Tishinov, K.; Parekh, S.; Graef, M.; Spang, A.; Tessarz, P.: The RNA-binding protein Puf5 contributes to buffering of mRNA upon chromatin-mediated changes in nascent transcription. J Cell Sci 15 (134), p. jcs259051 (2021)

Nikopoulou, C.; Kleinenkuhnen, N.; Parekh, S.; Sandoval, T.; Schneider, F.; Giavalisco, P.; Bozukova, M.; Vesting, A. J.; Altmüller, J.; Wunderlich, T. et al.; Kondylis, V.; Tresch, A.; Tessarz, P.: Single-cell resolution unravels spatial alterations in metabolism, transcriptome and epigenome of ageing liver. bioRxiv 15 (134), p. jcs259051 (2021)

Pouikli, A.; Parekh, S.; Maleszewska, M.; Nikopoulou, C.; Baghdadi, M.; Tripodi, I.; Folz-Donahue, K.; Hinze, Y.; Mesaros, A.; Hoey, D. et al.; Giavalisco, P.; Dowell, R.; Partridge, L.; Tessarz, P.: Chromatin remodeling due to degradation of citrate carrier impairs osteogenesis of aged mesenchymal stem cells. Nature Aging 1 (9), pp. 810 - 825 (2021)

Vieth, B.; Parekh, S.; Ziegenhain, C.; Enard, W.; Hellmann, I.: A systematic evaluation of single cell RNA-seq analysis pipelines. Nat Commun 10 (1), p. 4667 (2019)

Nikopoulou, C.; Parekh, S.; Tessarz, P.: Ageing and sources of transcriptional heterogeneity. Biol Chem 400 (7), pp. 867 - 878 (2019)