Publications of Thomas Colby

Mukherjee, R.; Bhattacharya, A.; Mello-Vieira, J.; Kuncha, S. K.; Hoffmann, M.; Gonzalez, A.; Rathore, R.; Chadha, A.; Shin, D.; Colby, T. et al.; Matić, I.; Mukherjee, S.; Misra, M.; Dikic, I.: Serine ubiquitination of SQSTM1 regulates NFE2L2-dependent redox homeostasis. Autophagy (2024)

Longarini, E. J.; Dauben, H.; Locatelli, C.; Wondisford, A. R.; Smith, R.; Muench, C.; Kolvenbach, A.; Lynskey, M. L.; Pope, A.; Bonfiglio, J. J. et al.; Jurado, E. P.; Fajka-Boja, R.; Colby, T.; Schuller, M.; Ahel, I.; Timinszky, G.; O’Sullivan, R. J.; Huet, S.; Matić, I.: Modular antibodies reveal DNA damage-induced mono-ADP-ribosylation as a second wave of PARP1 signaling. Molecular Cell (2023)

Adams, M.; Sharma, R.; Colby, T.; Weis, F.; Matić, I.; Bhogaraju, S.: Structural basis for protein glutamylation by the Legionella pseudokinase SidJ. Nat Commun 12 (1), p. 6174 (2021)

Liu, Y.; Mukherjee, R.; Bonn, F.; Colby, T.; Matić, I.; Glogger, M.; Heilemann, M.; Dikic, I.: Serine-ubiquitination regulates Golgi morphology and the secretory pathway upon Legionella infection. Cell Death Differ 28 (10), pp. 2957 - 2969 (2021)

Li, X.; Franz, T.; Atanassov, I.; Colby, T.: Step-by-Step Sample Preparation of Proteins for Mass Spectrometric Analysis. Methods Mol Biol 2261, pp. 13 - 23 (2021)

Bonfiglio, J. J.; Leidecker, O.; Dauben, H.; Longarini, E. J.; Colby, T.; San Segundo-Acosta, P.; Perez, K. A.; Matic, I.: An HPF1/PARP1-Based Chemical Biology Strategy for Exploring ADP-Ribosylation. Cell 183 (4), pp. 1086 - 1102 e23 (2020)

Wang, Y.; Garrido-Oter, R.; Wu, J.; Winkelmüller, T. M.; Agler, M.; Colby, T.; Nobori, T.; Kemen, E.; Tsuda, K.: Site-specific cleavage of bacterial MucD by secreted proteases mediates antibacterial resistance in Arabidopsis. Nat Commun 10 (1), p. 2853 (2019)

Colby, T.; Bonfiglio, J. J.; Matić, I.: Nonlocalized Searching of HCD Data for Fast and Sensitive Identification of ADP-Ribosylated Peptides. Methods Mol Biol 1813, pp. 255 - 269 (2018)

Ziemann, S.; van der Linde, K.; Lahrmann, U.; Acar, B.; Kaschani, F.; Colby, T.; Kaiser, M.; Ding, Y.; Schmelz, E.; Huffaker, A. et al.; Holton, N.; Zipfel, C.; Doehlemann, G.: An apoplastic peptide activates salicylic acid signalling in maize. Nat Plants 4 (3), pp. 172 - 180 (2018)

Zhiteneva, A.; Bonfiglio, J. J.; Makarov, A.; Colby, T.; Vagnarelli, P.; Schirmer, E. C.; Matić, I.; Earnshaw, W. C.: Mitotic post-translational modifications of histones promote chromatin compaction in vitro. Open Biol 7 (9) (2017)

Bonfiglio, J. J.; Colby, T.; Matić, I.: Mass spectrometry for serine ADP-ribosylation? Think o-glycosylation! Nucleic Acids Res 45 (11), pp. 6259 - 6264 (2017)

Bhogaraju, S.; Kalayil, S.; Liu, Y.; Bonn, F.; Colby, T.; Matić, I.; Dikic, I.: Phosphoribosylation of Ubiquitin Promotes Serine Ubiquitination and Impairs Conventional Ubiquitination. Cell 167 (6), pp. 1636 - 1649 e13 (2016)

Lalic, J.; Posavec Marjanovic, M.; Palazzo, L.; Perina, D.; Sabljic, I.; Zaja, R.; Colby, T.; Plese, B.; Halasz, M.; Jankevicius, G. et al.; Bucca, G.; Ahel, M.; Matić, I.; Cetkovic, H.; Luic, M.; Mikoc, A.; Ahel, I.: Disruption of Macrodomain Protein SCO6735 Increases Antibiotic Production in Streptomyces coelicolor. J Biol Chem 291 (44), pp. 23175 - 23187 (2016)

Leidecker, O.; Bonfiglio, J. J.; Colby, T.; Zhang, Q.; Atanassov, I.; Zaja, R.; Palazzo, L.; Stockum, A.; Ahel, I.; Matić, I.: Serine is a new target residue for endogenous ADP-ribosylation on histones. Nat Chem Biol 12 (12), pp. 998 - 1000 (2016)

Palazzo, L.; Thomas, B.; Jemth, A. S.; Colby, T.; Leidecker, O.; Feijs, K. L.; Zaja, R.; Loseva, O.; Puigvert, J. C.; Matić, I. et al.; Helleday, T.; Ahel, I.: Processing of protein ADP-ribosylation by Nudix hydrolases. Biochem J 468 (2), pp. 293 - 301 (2015)